Wanted - opinions/details on online systems for annotation of genomes and metagenomes

Doing a little survey/snooping around.  Trying to compile a list of available online tools for annotating microbial genomes and metagenomes.  And I am also trying to get comments on what people think of the various tools.  There are some obvious candidates to think about

• IMG and IMG/M
• RAST and MG-RAST
• IGS annotation engine (which seems to no longer be a web server but an email the sequence to someone server).

But given that there are certainly many many more out there I decided to post a request to Twitter and Google plus and got some responses.

• Jonathan Eisen ‏ @phylogenomics
• Researching blog post on free/online microbial genome/metagenome annotation services - looking for examples beyond IMG & RAST
• Mick Watson @BioMickWatson
• @phylogenomics some microbial annotation pipelines mentioned in our review here bib.oxfordjournals.org/content/early/…
• Ewan Birney ‏ @ewanbirney 
• @phylogenomics Check out @EBImetagenomics ebi.ac.uk/metagenomics/: ORFs, Interproscan, submissions and more.
• Mick Watson ‏ @BioMickWatson 
• @ewanbirney @phylogenomics @EBImetagenomics needs illumina support, and support of assemblies :/

And from Google Plus where I asked "Researching blog post on free/online microbial genome/metagenome annotation services - looking for examples beyond IMG & RAST ":

• Mary Mangan - Oh, I know some:
• Manatee: http://www.jcvi.org/cms/research/projects/annotation-service/ 
• GATU: http://athena.bioc.uvic.ca/virology-ca-tools/gatu/ 
• Apollo: http://gmod.org/wiki/Apollo
• And also from Mary
• Here's a question on that at BioStar: 
• EDIT: Another question suggests Artemis: